Showing : software error • reset
0
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578
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Mr. Anjan Payra
software error
6.3 years ago anjan.payra • 0
1
vote
2
replies
1.1k
views
Problem to update the core packages
software error
updated 6.4 years ago by 25k • written 6.4 years ago by ▴ 10
7
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12
replies
2.9k
views
readGAlignmentPairs fail to read paired end data
software error
updated 6.4 years ago by 25k • written 6.4 years ago by ▴ 90
1
vote
2
replies
1.7k
views
phyloseq package installation problem in RStudio
software error
updated 6.4 years ago by ★ 1.1k • written 6.4 years ago by • 0
4
votes
4
replies
1.9k
views
Error in getBM
software error
updated 6.4 years ago by ▴ 20 • written 6.4 years ago by ▴ 20
0
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1
reply
1.8k
views
unable to install TCGAbiolinks
software error
6.4 years ago hoseyni.sb • 0
1
vote
5
replies
879
views
SummarizedExperiments error for reading the data
software error
updated 6.4 years ago by 68k • written 6.4 years ago by • 0
1
vote
3
replies
2.4k
views
Error on zlib.h while installing esATAC on Ubutu
software error esATAC zlib.h Ubuntu Tutorial
updated 6.4 years ago by 25k • written 6.4 years ago by • 0
6
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2
replies
2.1k
views
csaw: Error in path.expand(bam.file) : invalid 'path' argument
csaw software error
updated 6.4 years ago by 25k • written 6.4 years ago by ▴ 30
0
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0
replies
975
views
NOISeq 'readData' not writing correctly
software error NOISeq
6.4 years ago jledmondson • 0
0
votes
1
reply
954
views
GeneGA Error Message
software error
updated 6.4 years ago by • 0 • written 8.1 years ago by • 0
1
vote
7
replies
1.7k
views
BioMart webservices broken?
software error ensemblID conversion
updated 6.4 years ago by 68k • written 6.4 years ago by • 0
0
votes
1
reply
584
views
Annmap database accession problem
software error microarray
6.4 years ago kubracelikbas4 • 0
0
votes
1
reply
1.1k
views
Cannot find the package RDRToolbox that has been installed
software error
updated 6.4 years ago by 4.2k • written 6.4 years ago by • 0
4
votes
1
reply
1.1k
views
Cannot determine whether maintainer is subscribed to the bioc-devel mailing list (requires admin credentials).
software error
updated 6.4 years ago by ★ 6.6k • written 6.4 years ago by ▴ 10
0
votes
7
replies
3.8k
views
Issue installing RNA-seq workflow
software error deseq2 workflow rnaseqGene
updated 6.4 years ago by 25k • written 6.4 years ago by • 0
0
votes
1
reply
596
views
To check samples in manifest that do not have IDAT files
software error
6.4 years ago pspooja111 • 0
1
vote
2
replies
724
views
BioMart webservice returned an invalid result
software error annotation BioMart
updated 6.4 years ago by ★ 6.6k • written 6.4 years ago by ▴ 20
0
votes
7
replies
2.5k
views
ATACseqQC shiftGAlignmentsList leads to (all(elementNROWS)>3) is not TRUE error
ATACseqQC ATAC ATACseq software error Tutorial
updated 6.4 years ago by ★ 13k • written 6.4 years ago by • 0
0
votes
2
replies
1.1k
views
DESeqDataSetFromTximport gives <Object with null pointer>
deseq2 software error
updated 6.4 years ago by 43k • written 6.4 years ago by • 0
0
votes
5
replies
1.7k
views
MSnbase addIdentificationData problem
software error MSnbase
updated 6.4 years ago by 1.6k • written 6.4 years ago by • 0
2
votes
0
replies
1.2k
views
Aldex2 error following tutorial - complex study design
software error aldex2
6.4 years ago mstagliamonte ▴ 10
0
votes
1
reply
604
views
how to change PCA plot in ropls
software error
updated 6.4 years ago by 4.2k • written 6.4 years ago by • 0
0
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0
replies
596
views
3 years on, continued "Error biexponential transform flowTrans"
software error
6.4 years ago dburner1 • 0
0
votes
1
reply
595
views
cn.mops and case control analysis
software error
6.4 years ago erika.salvi • 0
0
votes
4
replies
1.9k
views
Cannot down load the "org.Hs.eg.db" completely
software error probe
updated 6.4 years ago by 25k • written 6.4 years ago by • 0
3
votes
2
replies
1.6k
views
GEO Download - "The query to BioMart webservice returned an invalid result..."
biomart geo software error ensembl
updated 6.5 years ago by ★ 6.6k • written 6.5 years ago by ▴ 10
1
vote
2
replies
1.3k
views
Can't install the correct version of bioconductor, keeps using old version
software error bioconductor
updated 6.5 years ago by 25k • written 6.5 years ago by • 0
0
votes
2
replies
3.2k
views
Error: row names supplied are of the wrong length in RUVSeq
RUVSeq software error edger
updated 6.5 years ago by ▴ 980 • written 6.6 years ago by • 0
0
votes
1
reply
916
views
Error while running PCA on 1.3 Million Brain Cells from E18 Mice
software error
6.5 years ago bsharmi6 • 0
2
votes
2
replies
2.9k
views
topGO package unable to find library(ALL) and data(ALL)
topGO software error
updated 6.5 years ago by 68k • written 6.5 years ago by ▴ 60
0
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2
replies
798
views
How to transform chromosome start end to band in batch using biomaRt
software error
updated 6.5 years ago by 68k • written 6.5 years ago by • 0
0
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0
replies
949
views
Warning: Error in impute.knn in SAM
software error microarray
6.5 years ago xgt1986627 ▴ 10
0
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0
replies
442
views
error when running SDA on exampleSE2
software error
6.5 years ago diana.hendrickx • 0
0
votes
0
replies
539
views
Run crlmm in R to analyze the omni5 dataset
software error
6.5 years ago chuanjiao6 • 0
0
votes
0
replies
553
views
How to enter mapped bam file in MEDIPS.R bioconductor package?
software error
6.5 years ago rousselene.jones • 0
0
votes
2
replies
1.4k
views
Celaref error relating to MAST DE ananlysis
software error celaref single cell RNA-seq
updated 6.5 years ago by ▴ 40 • written 6.5 years ago by • 0
0
votes
1
reply
571
views
Errors in VIPER build 1.18.0 while current version in github is 1.19.1
software error
updated 6.5 years ago by 25k • written 6.5 years ago by • 0
0
votes
4
replies
1.9k
views
Gviz unable to retrieve cytoband data for sacCer3 when trying to create ideogram
annotation software error Gviz
updated 6.5 years ago by ▴ 750 • written 6.5 years ago by • 0
0
votes
1
reply
853
views
MutationalPattern R plot96 error
software error
6.5 years ago khanm • 0
3
votes
4
replies
2.5k
views
Rhdf5lib Installation Problem - cp: cannot stat 'hdf5/c++/src/.libs/libhdf5_cpp.a'
software error Rhdf5lib
6.5 years ago z.navidi90 ▴ 10
0
votes
1
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364
views
install question . can't solve
software error
updated 6.6 years ago by 4.2k • written 6.6 years ago by • 0
16
votes
5
replies
16k
views
Error: Bioconductor version '3.8' requires R version '3.5'
software error
updated 6.6 years ago by ★ 6.6k • written 6.6 years ago by ▴ 10
0
votes
1
reply
1.3k
views
Analyzing (HiSeq) PANCAN data set RNA-seq data using DaMiRseq
DaMiR RNA-seq software error DaMiRseq
6.6 years ago Daedalus99 • 0
1
vote
4
replies
1.3k
views
Error in getClass(Class)
annotation software error
updated 6.6 years ago by 68k • written 6.6 years ago by • 0
1
vote
2
replies
1.6k
views
biomaRt fails to get flanking sequence
biomaRt software error R
updated 15 months ago by • 0 • written 6.6 years ago by • 0
0
votes
1
reply
3.5k
views
ComplexHeatmap package will not display heatmaps
ComplexHeatmap software error
updated 6.6 years ago by 68k • written 6.6 years ago by • 0
0
votes
6
replies
14k
views
Package version of Bioconductor cannot be unloaded, Error in unloadNamespace(package),help!!
microarray software error hgu133plus2.db
updated 6.6 years ago by 25k • written 6.6 years ago by • 0
0
votes
0
replies
1.0k
views
Estimating sample size for specific platforms
software error RnaSeqSampleSize r RNA-seq
6.6 years ago AZ ▴ 30
6
votes
2
replies
3.0k
views
How to add my own Entrez Gene IDs rather than using the ones from a default package?
annotation entrez gene ids software error
updated 6.6 years ago by 53k • written 6.6 years ago by ▴ 60
704 results • Page 5 of 15
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Replies
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
Answer: Finding duplicated entries in GRangesList by Kevin Blighe ★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: DESeq2 on non-RNASeq counts data by Kevin Blighe ★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
Votes
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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